We prove that the $p^\infty$-torsion of the transcendental Brauer group of an abelian variety over a finitely generated field of characteristic $p>0$ is bounded. This answers a (variant of a) question asked by Skorobogatov and Zarhin for abelian varieties. To do this, we prove a ‘flat Tate conjecture’ for divisors. We also study other geometric Galois-invariant $p^\infty$-torsion classes of the Brauer group which are not in the transcendental Brauer group. These classes, in contrast with our main theorem, can be infinitely $p$-divisible. We explain how the existence of these $p$-divisible towers is naturally related to the failure of surjectivity of specialisation morphisms of Néron–Severi groups in characteristic $p$.

Let $A$ be an abelian variety over a global field $K$ of characteristic $p\geqslant 0$. If $A$ has nontrivial (respectively full) $K$-rational $l$-torsion for a prime $l\neq p$, we exploit the fppf cohomological interpretation of the $l$-Selmer group $\text{Sel}_{l}\,A$ to bound $\#\text{Sel}_{l}\,A$ from below (respectively above) in terms of the cardinality of the $l$-torsion subgroup of the ideal class group of $K$. Applied over families of finite extensions of $K$, the bounds relate the growth of Selmer groups and class groups. For function fields, this technique proves the unboundedness of $l$-ranks of class groups of quadratic extensions of every $K$ containing a fixed finite field $\mathbb{F}_{p^{n}}$ (depending on $l$). For number fields, it suggests a new approach to the Iwasawa ${\it\mu}=0$ conjecture through inequalities, valid when $A(K)[l]\neq 0$, between Iwasawa invariants governing the growth of Selmer groups and class groups in a $\mathbb{Z}_{l}$-extension.